user-guide-img UCC Manual

Overview

The UNICORE Commandline Client (UCC) is a full-featured client for the UNICORE middleware. UCC has client commands for all the UNICORE basic services and the UNICORE workflow system.

It offers the following functions

For more information about UNICORE visit https://www.unicore.eu.

config-img Installation and configuration

Prerequisites

To run UCC, you need a Java runtime version 11 or later (OpenJDK preferred).

Download

You can get the UCC latest version from SourceForge UNICORE download page.

Installation and configuration

To install, unpack the distribution in a directory of your choice. It’s a good idea to add the bin/ directory to your PATH variable,

$ export PATH=$PATH:<UCC_HOME>/bin

where UCC_HOME is the directory you installed UCC in.

Note

Windows only

Please do not install UCC into a directory containing spaces such as Program files.

Also avoid long path names, this can lead to errors due to the Windows limit on command line length.

Setting environment variables can be done (as administrator) using the Control panel ‣ System ‣ Extras panel.

Though you can specify many parameters on the commandline, it is easiest to use a config file, so that you do not have to key in this information repeatedly.

Preferences file

UCC checks by default whether the file <userhome>/.ucc/preferences exists, and reads it.

A minimal example that specifies username, password and your preferred UNICORE registry URL would look as follows:

registry=<your registry>

authentication-method=username
username=demouser
password=test123

truststore.type=directory
truststore.directoryLocations.1=<path to CA file(s)>

client.serverHostnameChecking=NONE

Please refer to Common options to UCC for a full description of available options.

Note

If you are worried about security, and do not want specify the password: UCC will ask for it if it is not given in the preferences or on the commandline.

Note

Windows only

The preferences are usually searched in the c:\Users\<user_name>\.ucc folder.

To create the .ucc folder, you might have to use the command prompt mkdir command.

When specifying paths in the preferences file, the backslash \ character needs to be written using an extra backslash \\.

For example, if you are using a local UNICORE installation for testing, you could use

registry=https://localhost:8080/DEMO-SITE/rest/core/registries/default_registry

Tip

If you wish to change the default property file location, you can set a Java VM property in the UCC start script, for example by editing the command that starts UCC

$ java .... -Ducc.preferences=<preferences location> ....

Logging

UCC writes some messages to the console, more if you choose the verbose mode (-v option). If you need real logging (e.g. when using the batch mode), you can edit the <UCC_HOME>/conf/logging.properties file, which configures the Log4J logging infrastructure used in UNICORE.

Installing UCC extensions

UCC can be extended with additional commands. It is enough to copy the libraries (.jar files) of the extension into a directory that is scanned by UCC: in general these are the UCC lib and the ${HOME}/.ucc/lib directory.

Testing the installation

To test your UCC installation and to get information about the services available in the UNICORE system you’re connecting to, do

$ ucc system-info -l -v

start-img Getting started with UCC

Assuming you have successfully installed UCC, this section shows how to get going quickly.

Getting help

Calling UCC with the -h option will show the available options. To get a list of available commands, type:

$ ucc -h

To get help on a specific command, type:

$  ucc <command> -h

See also Common options to UCC for a list of common options.

Connecting

First, contact UNICORE and make sure you have access to some target systems:

$ ucc connect

List available sites

Then, list the sites available to you using:

$ ucc list-sites

Running your first job

The UCC distribution contains samples that you can run. Let’s run the date.u sample. The -v switch prints more info so you can see what’s going on.

$ ucc run -v <UCC_HOME>/samples/date.u

This will run date on a randomly chosen site, and retrieve the output. To run on a particular site, use the -s option to specify a particular target system.

Note

Look for UCC samples in the /usr/share/doc/unicore/ucc/samples directory.

Listing your jobs

The command

$ ucc list-jobs -l

will print a list of job URLs with their respective status (RUNNING, SUCCESSFUL, etc).

options-list-img Common options to UCC

The following table lists the options understood by most UCC commands. Most commands have additional options. You can always get a summary of all available options for a command by calling UCC with the -h or --help option, for example,

$ ucc run --help

Since it is not possible to give all the required options on the commandline, it is mandatory to create a preferences file containing e.g. your settings for keystore, registry, etc.

Table 1 Common options for the UCC

Option (short and long form)

Description

-c,–configuration <Properties_file>

Properties file containing your preferences. By default, a file $HOME/.ucc/preferences is checked.

-k,–authentication-method <auth>

Authentication method to use (default: USERNAME)

-o,–output <Output_dir>

Directory for any output produced (default is the current directory)

-r,–registry <List_of_Registry_URLs>

The comma-separated list of URLs of UNICORE registries

-v,–verbose

Verbose mode

-h,–help

Print help message

-y,–with-timing

Timing mode

User preferences

If you have multiple user IDs or are a member of multiple Unix Groups on the target system, you may wish to control the user attributes that are used when invoking UCC.

Here is a list of options related to user attributes:

Table 2 User attribute options

Option (short and long form)

Description

-Z, –preference

Select from your remote attributes (e.g. xlogin)

The preference option accepts multiple arguments of the form <name>:<value> where name:

Table 3 User attribute options

Name

Description

uid

Remote login

pgid

Primary group ID

supgids

Secondary group IDs (comma-separated)

role

UNICORE role (user, admin, …)

vo

virtual organisation

Configuration file

By default, UCC checks for the existence of a file <userhome>/.ucc/preferences and reads settings from there. As shown above, you can use a different file by specifying it on the commandline using the -c option.

The configuration file can contain default settings for many commandline options, which are given in the form <option name>=<value> where <option name> is the long form of the option. The property values may contain variables in the form ${VAR_X}, which are automatically replaced with the environmental variable values with the same name. Additionally a special variable ${UCC_CONFIG} is recognized and is replaced with the absolute path of your configuration file.

The most important part of configuration is how UCC should authenticate you to the UNICORE server(s) and what server(s) should be trusted.

An overview of the available authentication options can be retrieved using:

$ ucc help-auth

A minimal example for using the quickstart installation would be:

registry=https://localhost:8080/DEMO-SITE/services/Registry?res=default_registry

authentication-method=username
username=demouser
password=test123

truststore.type=directory
truststore.directoryLocations.1=<path to CA file(s)>

Important

To protect your passwords, you should make the file non-readable by others, for example on Unix using a command such as chmod 600 preferences.

Note

If required passwords are not given in the properties file, they will be queried interactively.

Username and password authentication

To authenticate with username and password, set the following:

authentication-method=username
username=<your remote username>
password=<your remote password>

Support for token based authentication

UCC has three different options for using token-based authentication:

  • via oidc-agent

  • directly contact an OIDC server as an OIDC client (requires client ID and secret)

  • specify the token directly as a config property

OIDC-Agent

UCC supports the oidc-agent tool that allows to interact with common OIDC servers to retrieve new access tokens.

To configure oidc-agent, UCC supports the following properties:

Table 4 Options for oidc-agent

Property name

Type

Default value / mandatory

Description

oidc-agent.account

string

mandatory

Account short name.

oidc-agent.lifetime

integer >= 1

Minimum lifetime of the issued access token.

oidc-agent.scope

string

OpenID scope(s) to request.

Your config file would require at least:

authentication-method=oidc-agent
oidc-agent.account=<oidc-agent account to be used>

OIDC Server

This is a low-level approach that requires the details on how to act as an OIDC client, you’ll need at least an OIDC token endpoint, client ID and secret.

Table 5 Options for oidc-server

Property name

Type

Default value / mandatory

Description

oidc.authentication

[BASIC, POST]

BASIC

How to authenticate (i.e. send client id/secret) to the OIDC server (BASIC or POST).

oidc.clientID

string

Client ID for authenticating to the OIDC server.

oidc.clientSecret

string

Client secret for authenticating to the OIDC server.

oidc.endpoint

string

mandatory

The OIDC server endpoint for requesting a token

oidc.grantType

string

client_credentials

Grant type to request.

oidc.otp

string

Additional one-time password for two-factor authentication. Set this to ‘QUERY’ to query it interactively.

oidc.password

string

Password used to log in. It is suggested not to use this option for security reasons. If not given in configuration, it will be asked interactively.

oidc.refreshInterval

integer number

300

Interval (seconds) before refreshing the token.

oidc.refreshTokenFile

string

(internal) Filename for storing the refresh token between UCC invocations.

oidc.request_key_for_otp

string

otp

(internal) How to send the OTP value to the server.

oidc.username

string

Username used to log in. If not given in configuration, it will be asked interactively.

authentication-method=oidc-server
oidc.endpoint=<oidc server token endpoint>
oidc.username=...
oidc.password=...

UCC also supports sending an OTP (one-time password) to Keycloak. To enable, add

oidc.otp=QUERY

to your config. The OTP token is queried from the command-line (the OTP value can also be placed verbatim in the preferences as oidc.otp=your_otp_value ).

UCC stores the refresh token (if any) and tries to use it, before using the username/password again, also accross UCC invocations. (The token is stored in a file “$HOME/.ucc/refresh-tokens”, this default can be changed via a config variable)

Bearer token in config

Last not least, if you have a Bearer token via some other means, you can directly put the token into your config file:

authentication-method=bearer-token
token=...

Certificate-based authentication

For UNICORE installations that support (or even require) client certficates for authentication, set:

authentication-method=X509

credential.path=<your keystore>
credential.password=XXXXXXX

Truststore options

In most cases you only need a truststore directory containing trusted certificates:

truststore.type=directory
truststore.directoryLocations.1=/trust/dir/*.pem

A full list of options related to truststore management is available in the following table:

Table 6 Truststore properties

Property name

Type

Default value / mandatory

Description

truststore.allowProxy

[ALLOW, DENY]

ALLOW

Controls whether proxy certificates are supported.

truststore.type

[keystore, openssl, directory]

mandatory

The truststore type.

truststore.updateInterval

integer number

600

How often the truststore should be reloaded, in seconds. Set to negative value to disable refreshing at runtime.(runtime updateable)

truststore.directoryConnectionTimeout

integer number

15

Connection timeout for fetching the remote CA certificates in seconds.

truststore.directoryDiskCachePath

filesystem path

Directory where CA certificates should be cached, after downloading them from a remote source. Can be left undefined if no disk cache should be used. Note that directory should be secured, i.e. normal users should not be allowed to write to it.

truststore.directoryEncoding

[PEM, DER]

PEM

For directory truststore controls whether certificates are encoded in PEM or DER. Note that the PEM file can contain arbitrary number of concatenated, PEM-encoded certificates.

truststore.directoryLocations.*

list of properties with a common prefix

List of CA certificates locations. Can contain URLs, local files and wildcard expressions.(runtime updateable)

truststore.keystoreFormat

string

The keystore type (jks, pkcs12) in case of truststore of keystore type.

truststore.keystorePassword

string

The password of the keystore type truststore.

truststore.keystorePath

string

The keystore path in case of truststore of keystore type.

truststore.opensslNewStoreFormat

[true, false]

false

In case of openssl truststore, specifies whether the trust store is in openssl 1.0.0+ format (true) or older openssl 0.x format (false)

truststore.opensslNsMode

[GLOBUS_EUGRIDPMA, EUGRIDPMA_GLOBUS, GLOBUS, EUGRIDPMA, GLOBUS_EUGRIDPMA_REQUIRE, EUGRIDPMA_GLOBUS_REQUIRE, GLOBUS_REQUIRE, EUGRIDPMA_REQUIRE, EUGRIDPMA_AND_GLOBUS, EUGRIDPMA_AND_GLOBUS_REQUIRE, IGNORE]

EUGRIDPMA_GLOBUS

In case of openssl truststore, controls which (and in which order) namespace checking rules should be applied. The ‘REQUIRE’ settings will cause that all configured namespace definitions files must be present for each trusted CA certificate (otherwise checking will fail). The ‘AND’ settings will cause to check both existing namespace files. Otherwise the first found is checked (in the order defined by the property).

truststore.opensslPath

filesystem path

/etc/grid-security/certificates

Directory to be used for opeenssl truststore.

truststore.crlConnectionTimeout

integer number

15

Connection timeout for fetching the remote CRLs in seconds (not used for Openssl truststores).

truststore.crlDiskCachePath

filesystem path

Directory where CRLs should be cached, after downloading them from remote source. Can be left undefined if no disk cache should be used. Note that directory should be secured, i.e. normal users should not be allowed to write to it. Not used for Openssl truststores.

truststore.crlLocations.*

list of properties with a common prefix

List of CRLs locations. Can contain URLs, local files and wildcard expressions. Not used for Openssl truststores.(runtime updateable)

truststore.crlMode

[REQUIRE, IF_VALID, IGNORE]

IF_VALID

General CRL handling mode. The IF_VALID setting turns on CRL checking only in case the CRL is present.

truststore.crlUpdateInterval

integer number

600

How often CRLs should be updated, in seconds. Set to negative value to disable refreshing at runtime.(runtime updateable)

truststore.ocspCacheTtl

integer number

3600

For how long the OCSP responses should be locally cached in seconds (this is a maximum value, responses won’t be cached after expiration)

truststore.ocspDiskCache

filesystem path

If this property is defined then OCSP responses will be cached on disk in the defined folder.

truststore.ocspLocalResponders.<NUMBER>

list of properties with a common prefix

Optional list of local OCSP responders

truststore.ocspMode

[REQUIRE, IF_AVAILABLE, IGNORE]

IF_AVAILABLE

General OCSP ckecking mode. REQUIRE should not be used unless it is guaranteed that for all certificates an OCSP responder is defined.

truststore.ocspTimeout

integer number

10000

Timeout for OCSP connections in miliseconds.

truststore.revocationOrder

[CRL_OCSP, OCSP_CRL]

OCSP_CRL

Controls overal revocation sources order

truststore.revocationUseAll

[true, false]

false

Controls whether all defined revocation sources should be always checked, even if the first one already confirmed that a checked certificate is not revoked.

Truststore examples

Here are some examples for commonly used trust store configurations.

Most commonly used is a directory (with a minimal set of options):

truststore.type=directory
truststore.directoryLocations.1=/trust/dir/*.pem

OpenSSL trust store:

truststore.type=openssl
truststore.opensslPath=/etc/grid-security/
truststore.opensslNsMode=EUGRIDPMA_GLOBUS_REQUIRE
truststore.updateInterval=1200
truststore.crlMode=IF_VALID

Java keystore used as a trust store:

truststore.type=keystore
truststore.keystorePath=/some/dir/truststore.jks
truststore.keystoreFormat=JKS
truststore.keystorePassword=xxxxxx

Client options

The configuration file may also contain low-level options, for example, if you need to specify connection timeouts, http proxies, etc.

Table 7 Client options

Property name

Type

Default value / mandatory

Description

client.digitalSigningEnabled

[true, false]

true

Controls whether signing of key web service requests should be performed.

client.httpAuthnEnabled

[true, false]

false

Whether HTTP basic authentication should be used.

client.httpPassword

string

empty string

Password for use with HTTP basic authentication (if enabled).

client.httpUser

string

empty string

Username for use with HTTP basic authentication (if enabled).

client.maxWsCallRetries

integer number

3

Controls how many times the client should try to call a failing web service. Note that only the transient failure reasons cause the retry. Note that value of 0 enables unlimited number of retries, while value of 1 means that only one call is tried.

client.messageLogging

[true, false]

false

Controls whether messages should be logged (at INFO level).

client.securitySessions

[true, false]

true

Controls whether security sessions should be enabled.

client.serverHostnameChecking

[NONE, WARN, FAIL]

WARN

Controls whether server’s hostname should be checked for matching its certificate subject. This verification prevents man-in-the-middle attacks. If enabled WARN will only print warning in log, FAIL will close the connection.

client.sslAuthnEnabled

[true, false]

true

Controls whether SSL authentication of the client should be performed.

client.sslEnabled

[true, false]

true

Controls whether the SSL/TLS connection mode is enabled.

client.wsCallRetryDelay

integer number

10000

Amount of milliseconds to wait before retry of a failed web service call.

client.http.allow-chunking

[true, false]

true

If set to false, then the client will not use HTTP 1.1 data chunking.

client.http.connection-close

[true, false]

false

If set to true then the client will send connection close header, so the server will close the socket.

client.http.connection.timeout

integer number

20000

Timeout for the connection establishing (ms)

client.http.maxPerRoute

integer number

6

How many connections per host can be made. Note: this is a limit for a single client object instance.

client.http.maxRedirects

integer number

3

Maximum number of allowed HTTP redirects.

client.http.maxTotal

integer number

20

How many connections in total can be made. Note: this is a limit for a single client object instance.

client.http.socket.timeout

integer number

0

Socket timeout (ms)

client.http.nonProxyHosts

string

Space (single) separated list of hosts, for which the HTTP proxy should not be used.

client.http.proxy.password

string

Relevant only when using HTTP proxy: defines password for authentication to the proxy.

client.http.proxy.user

string

Relevant only when using HTTP proxy: defines username for authentication to the proxy.

client.http.proxyHost

string

If set then the HTTP proxy will be used, with this hostname.

client.http.proxyPort

integer number

HTTP proxy port. If not defined then system property is consulted, and as a final fallback 80 is used.

client.http.proxyType

string

HTTP

HTTP proxy type: HTTP or SOCKS.

Other options

The following table lists other options, that are more rarely used:

Table 8 Other options for the UCC

Property name

Description

blacklist

Comma separated patterns for sites / URLs to ignore

contact-registry

Do not attempt to contact the registry, even if one is configured

run-jobs-img Running jobs

Introduction

The UCC can run jobs specified in the JSON job description format that is used by the UNICORE REST API, plus a few extensions related to handling of local files, submission options, etc. See Job description format for all the details.

In the following it is assumed that you have UCC installed Installation and configuration and tried some examples Getting started with UCC.

For example, assume the file myjob.u looks as follows:

{
  "ApplicationName": "Date",
  "ApplicationVersion": "1.0"
}

To run this through UCC, issue the following command:

$ ucc run myjob.u

This will submit the job, wait for completion, download the stdout and stderr files, and place them in your default output directory. The run command has a number of options, to see all the possibilities use the built-in help:

$ ucc run -h

Controlling the output location and file names

Output files will be placed in the directory given by the -o option, if not given, the current directory is used. Also, file names will be put into a subdirectory named as the job id, to prevent accidental overwriting of existing files. This behaviour can be changed using the -b option. When -b is given on the command line, no subdirectory will be created.

Specifying the site

In the example above, a random site will be chosen to execute the job. To control it, you can use the -s option. This will accept the name of a target system. The target systems available to you can be listed by

$ ucc list-sites

Accessing a job’s working directory

Using the UCC’s data management functions, the job working directory can be accessed at any time after job submission. Please see section Data management functions for details.

Options overview

The following options are available when running jobs (see also the general options overview in Common options to UCC):

Table 9 Job submission options for UCC

Option (Short and long form)

Description

-a,–asynchronous

Run asynchronously

-b,–brief

Do not create a sub-directory for output files

-B,–broker

Select the type of resource broker to use (see run -h for a list)

-s,–sitename <SITE>

Site where the job shall be run

-S,–schedule <Time>

Schedule the submission of the job at the given time

-o,–output <Output_dir>

Directory for any output produced (default is the current directory)

Resource selection

In general the user selects the execution site.

If no site is specified upon submission, UCC will select a matching site, where the requirements (resources, applications) are met.

In case there are other types of brokers available, they can be selected using the -B or --broker option.

  • LOCAL (default): brokering is done by UCC itself

To see if other brokers exist, execute ucc run -h, the available options will be listed in the help for the -B option.

Processing jobs asynchronously

In case of long-running jobs, you will want to run the job asynchronously, i.e. just submit the job, stage in any files and start it, in order to get the results later.

Asynchronous submission

Use the -a flag when submitting a job:

$ ucc run -a <job file>

This will submit the job, stage-in any local files, start the job and exit. A job file will be written that contains information about the job endpoint and any exports that should be performed once the job has finished. You can use this file later with the get-output and job-status commands.

Get the status of particular jobs

The command

$ ucc job-status <job_file_or_url> <job_file_or_url_2> ...

will retrieve the status of the given jobs. If not given on the command line, a job URL will be read from the console.

The arguments can be either a job URL, or the name of a job file (as written by the run -a command).

Download results

To get stdout and stderr as well as other files marked for export, do:

$ ucc get-output -o <outdir> <job_file_or_url> <job_file_or_url_2> ...

Here, the option -o specifies the directory where to put the output, by default the current directory is used. As before, a job address can also be read from the console.

Referencing a job by its URL (endpoint address)

In case you want to check on a job not submitted through UCC, you can refer to a job by its URL. The list-jobs command will produce a list of all job URLs that you can access.

Note that in this case UCC will only retrieve stdout and stderr files. To download other result files, you’ll have to use the data movement functions described in Data management functions.

Scheduling job submission to the batch system

Sometimes a user wishes to control the time when a job is submitted to the batch queue, for example, because he/she knows that a certain queue will be empty at that time.

To schedule a job, you can either use the -S option to the ucc run command:

$ ucc run -S "12:24" ...

Alternatively, you can specify the start time in your job file using the Not before keyword:

{
  "Not before": "12:30",
}

In both cases, the specified start time can be given in the brief “HH:mm” (hours and minutes) format shown above, or in the full ISO 8601 format including year, date, time and time zone:

{
 "Not before": "2011-12-24T12:30:00+0200",
}

Executing a command

If you just want to execute a simple command remotely (i.e. without data staging, resource specifications etc), you can use the exec command.

This will run the given command remotely (similarly to ssh), and print the output to the console. You can specify the site with the -s option. If you do not specify the site, a random site will be chosen.

UNICORE will run the command on the login node, it will not be submitted to the batch system.

For example, try

$ ucc exec /bin/date

To safely pass arguments to the executable, use “–” to end the UCC part of the command line, for example

$ ucc exec -- date --rfc-email

job-desc-img Job description format

UCC uses the JSON Job description format that is used by the UNICORE REST API, adding support for handling local files.

Several complete job samples can be found in the samples directory of the distribution. On Linux, check also the /usr/share/unicore/ucc/samples directory.

To view an example job showing most of the available options, run:

$ ucc run -H

(most of the options shown are not mandatory, of course).

UCC extensions to the UNICORE job description format

It is often the case that your job requires files from your local workstation, or you want UCC to download result files once the job has finished.

UCC achieves this by allowing paths to local files in the To and/or From directives of the data staging part(s) in your job.

Local files can be given as an absolute or relative path; in the latter case the configured output directory will be used as base directory.

Importing local files into the job workspace

To import files from your local computer, you can use the usual Imports keyword, with a path as the From argument.

You can of course mix local and remote files. This example shows some of the possibilities:

{

      "Imports": [

      #
      # import a local file from the client machine
      # into the job workspace
      #

        { "From": "/work/data/fileName", "To": "fileName" },

      #
      # import a set of local files from the client machine
      # into the job workspace
      #

        { "From": "/work/data/pdf/*.pdf", "To": "/" },

      #
      # import a remote file from a UNICORE storage using the UFTP protocol
      #

        { "From": "UFTP:https://gw:8080/DEMO-SITE/rest/core/storages/Home/files/testfile",
          "To": "testfile" },

      # create a symlink from a file on the compute machine to the job workspace

        { "From": "link:/work/data/testfile", "To": "linked-file" },

      # copy a file on the compute machine to the job workspace

        { "From": "file:/work/data/testfile", "To": "copied-file" },

      ],

}

If for some reason an import fails, but you want the job to run anyway, there is a flag FailOnError that can be set to false:

"Imports": [

     { "From": "/work/data/fileName",
       "To": "fileName",
       "FailOnError": "false"
     },

],

Note

UCC supports simple wild cards (* and ?) for importing and exporting files.

Exporting result files from the job workspace

To export files from the job’s working directory to your local machine, use the normal Exports keyword, with a file path as the To argument. Here is an example Exports section that specifies two exports:

{
  "Exports": [

    # this exports all png files to a local directory

      { "From": "*.png", "To": "/home/me/images/" },

    # this exports a single file to a to local directory
    # failure of this data transfer will be ignored

      { "From": "error.log",
        "To": "/home/me/logs/error.log",
        "FailOnError": "false" },

    # this exports to a UNICORE storage

    { "From": "stdout",
      "To": "https://gw:8080/DEMO-SITE/rest/core/storages/Home/files/results/myjob/stdout"
    },
  ]
}

As a special case, UCC also supports downloading files from other UNICORE storages (after the job has finished), using the Exports keyword:

{
   "Exports": [

    # this exports a file from a UNICORE storage

      { "From": "https://gw:8080/DEMO-SITE/rest/core/storages/Work/files/somefile",
        "To": "/home/me/somefile"
      },
  ]
}

data-img Data management functions

UCC offers access to all the data management functions in UNICORE. You can upload or download data from a remote server, initiate a server-to-server transfer, create directories and so on.

Specifying remote locations

Remote locations are specified via URIs that includes protocol, storage server (host/port), site name, and filename. For example,

BFT:https://mygateway:8080/SITE/rest/core/storages/HOME/files/my_file

specifies a file named /my_file on the storage instance https://mygateway:8080/SITE/rest/core/storages/HOME, using the BFT protocol.

Paths are always relative to the storage root, not the root of the actual file system.

The protocol is optional, and will default to BFT if not given.

Data movement

cp

The cp command is a generic command for copying source file(s) to a target destination, where source and target can be remote locations or files on the local machine. Wild card characters * and ? are supported.

Examples for client-server transfers:

$ ucc cp data/*.pdf https://server/rest/core/storages/SHARE/files/pdfs
$ ucc cp https://server/rest/core/storages/SHARE/files/pdfs .

The -R option allows to choose whether subdirectories are to be copied too.

The -X option allows to resume a previous transfer. Missing data will be appended to an existing target file (if the chosen protocol supports it).

Examples for server-server transfer:

$ ucc cp https://server/rest/core/storages/SHARE/files/*.pdf  \
     https://otherserver/rest/core/storages/WORK/data/

For server-to-server transfers, the cp command supports several additional options.

The -S option allows to schedule a transfer for a certain time. For example,

$ ucc cp -S "23:00" ...

The format is simply HH:mm (hours and minutes). Alternatively, you can give the time in the full ISO 8601 format including year, date, time and time zone:

$ ucc cp -S "2011-12-24T12:30:00+0200" ...

Another useful option is -a which will execute the server-server transfer asynchronously, i.e. the client will not wait for the transfer to finish.

copy-file-status

This will print the status of the given data transfer. As argument, it expects a file name containing the transfer reference, or directly the reference.

Example (for Unix) which captures the reference into a shell variable:

$ export ID=$(ucc cp -a ...
$ ucc copy-file-status $ID

Specifying the file transfer protocol

To use a different protocol from the default BFT, you can use the -P option to specify your preferred protocol. UCC will try to match them with the capabilities of the storage and use the first match. Your preferred protocol can also be listed in your preferences file using the protocols key:

protocols=UFTP

Note

If necessary, you can specify additional filetransfer options in your preferences file as well. For example, to use the UFTP protocol you may need to specify the client host address and the number of parallel streams explicitely:

uftp.client.host=your_client_ip_address
uftp.streams=2
# encrypt data (at the cost of performance)
uftp.encryption=true
# compress data
uftp.compression=true

Use the special value all to enable all available client IP addresses for UFTP.

uftp.client.host=all

You can also override the UFTP server host, which can be useful in case the UFTP server is accessible via multiple network interfaces:

uftp.server.host=myhost.com

UCC will try to use reasonable defaults for any missing parameters.

General commands

mkdir

This will create a directory (including required parent directories) remotely.

Example:

$ ucc mkdir https://mygateway:8080/SITE/rest/core/storages/HOME/files/pdfs

rm

This will remove a file or directory remotely. By default, UCC will ask for a confirmation. Use the --quiet or -q option to disable this confirmation (e.g. when using this command in scripts).

Example:

$ ucc rm https://mygateway:8080/SITE/rest/core/storages/HOME/files/pdfs

rename

This will rename/move a remote file/directory on the same storage.

Example:

$ ucc rename https://mygateway:8080/SITE/rest/core/storages/HOME/files/data/foo1.pdf /files/data/foo2.pdf

will rename the file foo1.pdf to foo2.pdf.

stat

This command shows full information on a certain file or directory. Add the -m flag to also print user-defined metadata.

Example:

$ ucc stat -m https://mygateway:8080/SITE/rest/core/storages/HOME/files/foo.txt

Finding data

ls

This will list a remote directory. Useful options are: -l (detailed output), -H (human-friendly) and -R (recurse).

Example:

$ ucc ls -l -H https://mygateway:8080/SITE/rest/core/storages/HOME/

If the storage supports metadata, you can get the metadata of a single file using ls -l -m:

$ ucc ls -l -m https://mygateway:8080/SITE/rest/core/storages/HOME/.bashrc

Using the StorageFactory service

UNICORE sites may allow users to dynamically create storage resources, which even can be linked to special back-end systems like Apache HDFS, iRODS, or cloud storage like Amazon S3.

You can find out if there are sites supporting this StorageFactory service either by running the system-info -l command, or better using

$ ucc create-storage -i

This will list the available StorageFactory services and also show which types of storage are supported and how much space is left on each of them.

UCC supports creating storages via the create-storage command. The simple

$ ucc create-storage

will create a new storage resource using the default storage type at some site.

Usually you want to control at least where the storage is created. Additionally, the type of storage and some parameters can be passed to UCC.

As an example, creating a storage of type S3 would look like this:

$ ucc create-storage -t S3 accessKey=... secretKey=...

You can also read parameters from a file. Say you have your S3 keys in a file s3.properties, then you can use the following syntax:

$ ucc create-storage -t S3 @s3.properties

You can also mix this with the normal key=value syntax, or mix it like this:

$ ucc create-storage -t S3 accessKey=@s3.accessKey secretKey=@s3.secretKey

The last version key=@file causes just the value to be read from the named file.

metadata-img Metadata management functions

UCC offers a simple interface to access the metadata management service in UNICORE.

Basics

The metadata functions are all accessed via a single UCC command metadata. The actual operation to be performed is given with the -C (i.e. command) option.

The storage to be operated upon is given using the -s option.

In addition to the URL, the name of the target file on the storage is required.

Metadata is represented in JSON format. The metadata operations usually read metadata from a file (or write results to a file), which is specified using the -f option.

In the following examples, <STORAGE> denotes the URL of a storage capable of handling metadata.

Available commands

Creating metadata

To create metadata, a file in JSON format is required containing key-value pairs. For example, edit the file meta.json to contain:

{
  "foo": "bar"
}

Say we have a file test on our storage, then you can create metadata as follows:

$ ucc metadata -C create -f meta.json -s <STORAGE> /test

If you now look at the file with ls -l -m,

$ ucc ls -l -m  <STORAGE>/test

you should get something like this:

-rw-           3344 2011-06-27 22:32 /test
{
  "foo": "bar",
  "resourceName": "/test"
}

Reading metadata

Apart from the ls -l -m used above, there is also an explicit read command, which can write the metadata to a file as well:

$ ucc metadata -C read -s <STORAGE> /test -f out.json

The -f option is optional.

Updating metadata

Using update, the given metadata is merged with any existing metadata. Say we have a file x.json containing:

{
 x: y
}

We can append this to the existing metadata:

$ ucc metadata -C update -s <STORAGE> /test -f x.json

Check that the metadata has indeed been appended.

Deleting metadata

Explicitely deleting is also possible:

$ ucc metadata -C delete -s <STORAGE> /test

Check that the metadata has indeed been deleted.

Searching

Searching requires a search string (according to the rules of Apache Lucene), and is triggered by the search command:

$ ucc metadata -C search -q "foo" -s <STORAGE> /

Triggering metadata extraction

To trigger the extraction of metadata on the server, use the start-extract command:

$ ucc metadata -C start-extract -s <STORAGE> /

In this case the / denotes the base path from which to start the extraction process.

workflow-img Workflows

Introduction

UCC supports the UNICORE Workflow service and allows to submit workflows and manage them.

The workflows are executed server-side, and UCC is used only for submitting, managing data and getting results. UCC also provides helper features for dealing with the workflows’ input/output data and parametrised workflow templates.

Note

Version 8.x of the Workflow service has changed a lot, and existing 7.x XML workflows will need to be converted / refactored.

Command overview

The following commands are provided:

  • workflow-submit: submit a workflow file

  • workflow-control: abort or resume a running workflow

  • list-workflows: list information about workflows

More details and examples follow below.

Basic use

To check the availability of the Workflow service in the configured registry, issue the following command:

$ ucc system-info -l

This should show at least an accessible Workflow service.

The distribution contains some example workflow files in the samples/workflows directory that you can edit and submit.

$ ucc workflow-submit yourworkflow.json

which will submit the workflow and print the address of the workflow to standard output.

To get the workflow status:

$ ucc list-workflows <workflow_address>

To list all your workflows, you can use the list-workflows command without an explicit workflow address:

$ ucc list-workflows -l

Workflow description format

The JSON format used by that the Workflow service can be found here.

Managing workflow data

Importing local data for use by a workflow

If you have local files that need to be imported before starting the workflow, you can use a normal UCC job file that contains only an Imports section:

{
 "Imports":
 [
   { "From": "local_file_1", "To": "wf:workflow_file_name_1", },
   { "From": "local_file_2", "To": "wf:workflow_file_name_2", },
 ...
 ],
}

UCC will upload the local files to a remote storage (which you can specify) and automatically register them with the workflow upon submission.

Your workflow JSON can then reference them as wf:... in the workflow activities.

You can also manually register files by adding in inputs section to your workflow JSON.

{
 "inputs": {
   "wf:infile1" : "remote_url_1",
   "wf:infile2" : "remote_url_2",
 },
}

Workflow templates

If the workflows contains a Template parameters section, the corresponding replacement will be done by reading parameter values from the .u file. These so-called workflow templates can be a very simple and safe way to make adjustments in complex workflows before submission. As an example, consider the following workflow:

{
  "Template parameters": {
      "SLEEPTIME": {
         "type" : "INTEGER",
         "default": "10",
      }
  },

  "activities" : [
      {
          "id": "sleep1",
          "job": {
              "Executable": "sleep",
              "Arguments": ["${SLEEPTIME}"],
          },
      },
  ],
}

This introduces a parameter SLEEPTIME with default value 10.

When the workflow is submitted, you can specify a JSON file with the -u option, which will be checked for a parameter named SLEEPTIME

{
  "SLEEPTIME": "1",
}

and if present, the value will be replaced in the workflow.

Resuming a held workflow

A workflow in status HELD can be resumed using the workflow-control resume command. If the workflow has variables/parameters, updated values can be sent with the resume command.

batch-img Batch processing

The batch command allows you to run many jobs without having to start UCC each time. You can control how many jobs should go to which site. This allows efficient job processing, while putting some load on the client machine. If you need to take the client offline, you should consider using the workflow system instead, which also allows efficient high-throughput processing.

Assume you have a bunch of jobs in UCC’s job description format stored in a directory jobs. The output should go to a directory out. You can run them all through UCC using a single invocation as follows:

$ ucc batch -i jobs -o out

As job files, UCC will accept files ending in .u.

Options

You can run in follow mode, where UCC will watch the input directory, and will process new files as they arrive:

$ ucc batch -f -i jobs -o out

Performance tuning options

Getting the most performance out of UCC and the UNICORE installation can be a challenging task. Sending too many jobs to a site might decrease throughput, sometimes the client machine can be the limiting factor, etc.

You should experiment a bit to get the best performance for your specific setup. UCC has many options available for tuning. Here is an overview:

Table 10 Tuning options for the UCC batch mode

Option (short and long form)

Description

-K,–keep

Do not delete finished jobs on the server. By default, finished jobs are destroyed.

-m,–max <MaxRunningJobs>

Limit on jobs submitted by UCC at one time (default: 100)

-t,–threads <NumThreads>

Number of threads to be used for processing (default: 4)

-u,–update <UpdateInterval>

Minimum time in milliseconds between status requests on a single job (Default: 1000)

-R,–no-resource-check

Do not check if the necessary application is available on the target system (will increase performance a bit)

-X,–no-fetch-outcome

Do not fetch standard output and error

-S,–submit-only

Only submit the jobs, do not wait for them to finish

-M,–max-new-jobs

Limit the number of job submissions (default: 100)

-s,–sitename

Specify which site to use

-W,–site-weights

Specify a file containing site weights

Resource selection in batch mode

By default, the UCC batch mode will select a random site for running a job. You can modify the selection in different ways:

  • using the -s option or a Site: <sitename>, entry in the job file, you can specify the site directly

  • use the -W option to specify a file containing site weights

Say you have two sites where one site is a big cluster and the other a small cluster. To send more jobs to the big cluster, you can use the site weights file:

#example site weights file for use with "ucc batch -W ..."

BIG-CLUSTER = 100
SMALL-CLUSTER = 10

#send no jobs to this site
BAD-CLUSTER = 0

# set default weight (for any sites not specified here)
UCC_DEFAULT_SITE_WEIGHT = 10

This would tell UCC to send 10 times more jobs to the BIG-CLUSTER site, and send no jobs to the BAD-CLUSTER. All other sites would get weight 10, i.e. the same as SMALL-CLUSTER.

usage-img The UCC shell

If you want to run a larger number of UCC commands, the overhead of starting the Java VM or checking the registry may become annoying. For this scenario, UCC offers a shell that allows the user to enter UCC commands interactively.

It is started by

$ ucc shell <options>

If you want to process a list of commands from a file instead of typing them, you can start the shell like this:

$ ucc shell -f commandsfile

or on Unix you can use the redirection features:

$ ucc shell < commandsfile

Changing property settings

To change a property setting in shell mode, you can use the set command. Without additional arguments, current properties are listed:

ucc> set registry=https://...  output=/tmp  ...

To set one or more properties, add space separated key=value strings:

ucc> set output=/work registry=https://....

You can also clear a property (set it to null) by using unset:

ucc> unset registry

Variables referenced via $var_name or ${var_name} will be replaced in commands. You can use this to make commands shorter and more readable. It’s also possible and useful to pre-set certain things in your preferences file.

For example,

ucc> set S1=https://myserver/my_site/rest/core/storages/HOME
ucc> ls -l $S1

A special variable $_ exists that is set by various commands to the last thing that was created or accessed.

For example,

ucc> run -a date.u
ucc> job-status $_

Running an external command

You can run an external command via the system (or simply !) shell command. For example,

ucc> system vi job.u

or simply

ucc> ! cat job.u

Exiting the shell

To exit, type exit or press Control-D.

share-img Sharing resources

Accessing UNICORE resources (jobs, storages, …) is usually only possible when you own the resource or when there are special server-side policies in place that allow you access.

UNICORE supports ACLs on a per-service instance basis. This means, that you can give other users access to your jobs, storages, etc.

For example, you might want to allow others to check your jobs’ status, or even allow them to abort jobs.

Note that to access actual files the permissions on file system level still need to match. Usually this is achieved by using Unix groups.

Editing ACLs

The ACLs are managed via the share command. Use the basic

$ ucc share <URL>

to share the current ACL for the given resource, where URL is the full URL of the resource, e.g.

$ ucc share https://localhost:8080/DEMO-SITE/rest/core/storages/HOME

To add an ACL entry use:

$ ucc share ACE1 ACE2 ... <URL>

where ACE is an access control entry expressed in a simple format:

[read|modify]:[DN|VO|GROUP|UID]:[value]

For example, to give modify permission to a user whose UNIX user id on the target system is test, you would use:

$ ucc share modify:UID:test <URL>

To delete entries use the -d option:

$ ucc share -d modify:UID:test <URL>

To delete all entries use the -b option:

$ ucc share -b <URL>

Permission levels

The permissions controlled by ACLs are as follows:

  • read: access resource properties

  • modify: perform actions e.g. job submission or creating a file export

Only the owner of a resource can edit the ACL or destroy the resource.

tunneling-img Port forwarding / tunneling

Starting with UNICORE 9.1.0, it is possible to open a tunnel (TCP socket connection) from the client to a service running on the HPC cluster. The service can run on a login node or even on a compute node.

Since this mechanism uses only the established UNICORE communication channels, it will work in any situation, unhindered by firewalls.

Traffic is forwarded from the client through the UNICORE HTTPS stack down to the cluster login node, where a (TSI) process is in charge of connecting to the backend service and forwarding data back through the UNICORE stack to the client. So there is chain of connections forwarding data through the following stack

  • Client application

  • Client-side listener (e.g. UCC)

  • Gateway

  • UNICORE/X

  • Server-side listener (TSI process) on the login node

  • Service

(in both directions).

That is quite a number of hops, so latency and throughput will be limited accordingly.

To establish the client side, UCC has a command open-tunnel, which behaves similarly to an SSH tunnel (ssh -L ...)

It is started by

$ ucc open-tunnel -L <listen-port> <endpoint>

The listen-port is the port where a local application can connect. You can use “0” to use any free port.

The endpoint is a UNICORE job endpoint URL, with a few extra parameters added:

/forward-port?port=<service_port>&host=<service_host>&loginNode=<tsinode

The port parameter is mandatory, and denotes the port where the backend service is listening.

The host and loginNode are optional:

  • host is the host where the service is running, must be reachable from the TSI (login node). It defaults to localhost (as seen from the login node!).

  • loginNode is useful in cases where there are multiple login nodes, and you wish to control on which login node the forwarding process is launched.

Upon connection, the tunneling process is initiated, and the forwarding of data is started. To stop listening and forwarding, press Control-C, or use some other method to stop the UCC process.

Example

While usually the backend service is also started via UNICORE, that is not strictly necessary. Any of your job endpoints will do.

In this example, however, we launch a Python web server via UNICORE, and then connect to that Python service via a tunnel.

Launch a UCC shell with ucc shell ... and run the following job to start the service, which will be listening on port 8877:

run -a

{ "Executable" : "python3 -m http.server 8877" }

(type CTRL-D to to launch the job)

Make sure to wait until this job is running, i.e.

job-status $_

shows it as RUNNING. The UCC shell special variable $_ automatically contains the last URL, i.e. the new job’s URL.

To open the tunnel:

open-tunnel -L 4321 $_/forward-port?port=8877

this will open a local listener on port 4321.

To test your tunnel, run something like the following (from ANOTHER terminal, don’t kill UCC):

wget http://localhost:4321/stdout

You might also try and open "http://localhost:4321" in a browser.

Final notes

Attention

USE RESPONSIBLY! This tool is not intended for high volume data streaming or a very high number of concurrent connections, since it does incur some overhead on the UNICORE infrastructure.

admin-img UCC for site administrators

UCC can be used for administrative and user support tasks, like checking server status, or getting the full details of a user job.

Security considerations

Usually, each UNICORE user has only access to his or her own resources (such as jobs). For administrative use, you will need to aquire administrator privileges. There are two ways to achieve this:

  • create dedicated user credentials (e.g. a certificate) and map them to the role admin (in the XUUDB, or whatever attribute source you are using). This method is recommended if you want to remotely administrate UNICORE/X.

  • use the server keystore (of the UNICORE/X server you want to administrate) as UCC keystore. This will also give you administrator privileges. For this you will need to be logged on to the UNICORE/X server, and UNICORE/X must accept certificate authentication.

Admin commands

UCC has dedicated commands for accessing the AdminService of a UNICORE/X container. To get started, try:

$ ucc admin-info -l

UCC will try to access the admin service on each availabe UNICORE/X server. For each server, a list of statistical and performance data will be listed.

It will also list the available admin commands for each server, with a short description of their parameters. For example, here is a sample output:

https://localhost:8080/DEMO-SITE/services/AdminService?res=default_admin
  Services:
    TargetSystemFactoryService[1]
    ...
  Monitors:
    use.externalConnectionStatus.REST_UnitySAMLAuthenticator: OK
    use.security.overview: ServerIdentity: CN=Demo UNICORE/X,O=UNICORE,C=EU;Expires: Thu Sep 09 12:01:19 CEST 2032;IssuedBy: CN=Demo CA,O=UNICORE,C=EU
    ....
  Metrics:
    use.externalConnectionStatus.REST_UnitySAMLAuthenticator: OK
    use.rest.callFrequency: 0.016677196376660174
    ...
  Available commands:
    ShowJobDetails : parameters: jobID, [xnjsReference]
    ShowServerUsageOverview : parameters: [clientDN]
    ToggleResourceAvailability : 'resources' - comma separated list of IDs
    ToggleJobSubmission : parameters: [message]
    ToggleBESJobSubmission :

To invoke a command, the admin-runcommand is used. It can take optional parameters.

Disabling/enabling job submission

For example, it is possible to disable/enable job submission to the server, using the ToggleJobSubmission command, which can take an optional message:

$ ucc admin-runcommand ToggleJobSubmission message="Maintenance"

The service will reply:

$> SUCCESS, service reply: OK - job submission is disabled

If a user now tries to submit, she will receive an error message on submission. Running the command again will re-enable the service:

$ ucc admin-runcommand ToggleJobSubmission message="Maintenance"
$> SUCCESS, service reply: OK - job submission is now enabled

Getting job details

To get the full job details (for example in user support), try:

$ ucc admin-runcommand ShowJobDetails jobID=<unique_jobid>

For example,

ucc admin-runcommand ShowJobDetails jobID=461f78c7-82a6-4887-9c33-6f538a4b0cb2
SUCCESS, service reply: Job information for 461f78c7-82a6-4887-9c33-6f538a4b0cb2
{Info=Action ID       : 461f78c7-82a6-4887-9c33-6f538a4b0cb2
Action type     : JSON
Status          : DONE (trans.: none)
Result          : SUCCESSFUL [Success.]
Owner           : CN=Demo User, O=UNICORE, C=EU
Job Definition: {"Job type":"interactive","DetailedStatusDisplay":"true","KeepFinishedJob":"true","Output":"/tmp","IDLocation":"/tmp","Executable":"date","haveClientStageIn":"false","Tags":["testing"]}
Processing context: de.fzj.unicore.xnjs.ems.ProcessingContext@17f4b0b6
Application Info: Application <unnamed>
Job log:
Thu Feb 25 16:25:07 CET 2021: Created with ID 461f78c7-82a6-4887-9c33-6f538a4b0cb2
Thu Feb 25 16:25:07 CET 2021: Created with type 'JSON'
Thu Feb 25 16:25:07 CET 2021: Client: Name: CN=Demo User,O=UNICORE,C=EU
Xlogin: uid: [schuller], gids: [schuller:audio, active=schuller, addingOSgroups: true]
Role: user: role from attribute source
Security tokens: User name: CN=Demo User,O=UNICORE,C=EU
Delegation to consignor status: true, core delegation status: false
Message signature status: UNCHECKED
Client's original IP: 127.0.0.1
Thu Feb 25 16:25:07 CET 2021: No staging in needed.
Thu Feb 25 16:25:07 CET 2021: Status set to READY.
Thu Feb 25 16:25:07 CET 2021: Status set to PENDING.
Thu Feb 25 16:25:08 CET 2021: Execution on login node
Thu Feb 25 16:25:08 CET 2021: Command is:
Thu Feb 25 16:25:08 CET 2021: #!/bin/bash -l
export PROJECTS_DIR=/opt/shared-data
#TSI_EXECUTESCRIPT

#RESOURCES
#TSI_DISCARD_OUTPUT true
#TSI_SCRIPT
#TSI_UMASK 77
umask 77
cd /opt/shared-data/UNICORE-Jobs//461f78c7-82a6-4887-9c33-6f538a4b0cb2/
 { date > /opt/shared-data/UNICORE-Jobs//461f78c7-82a6-4887-9c33-6f538a4b0cb2/stdout 2> /opt/shared-data/UNICORE-Jobs//461f78c7-82a6-4887-9c33-6f538a4b0cb2/stderr; echo $? > /opt/shared-data/UNICORE-Jobs//461f78c7-82a6-4887-9c33-6f538a4b0cb2//UNICORE_SCRIPT_EXIT_CODE ; } & echo $! > /opt/shared-data/UNICORE-Jobs//461f78c7-82a6-4887-9c33-6f538a4b0cb2//UNICORE_SCRIPT_PID
Thu Feb 25 16:25:08 CET 2021: TSI reply: submission OK.
Thu Feb 25 16:25:11 CET 2021: Submitted to classic TSI as [schuller schuller:DEFAULT_GID] with PID=30112 on [localhost]
Thu Feb 25 16:25:11 CET 2021: Exit code 0
Thu Feb 25 16:25:11 CET 2021: Job completed on BSS.
Thu Feb 25 16:25:11 CET 2021: Status set to DONE.
Thu Feb 25 16:25:11 CET 2021: Result: Success.
Thu Feb 25 16:25:11 CET 2021: Total: 3 sec., Stage-in: 0 sec., Queued: 0 sec., Main: 0 sec., Stage-out: 0 sec.}

Thus you can get a full view of what the user submitted and what was executed.

Listing jobs, sites, …

You can also use all normal UCC commands to access the server. Note however that due to the authentication and authorisation system in UNICORE, this may not always work as expected: the admin user might not have the required Unix permissions to access files, list directories, etc.

The UCC commands that list server-side things (list-jobs, etc.) accept a filtering option, that can be used to limit the results of the operation. Filtering works on the XML resource properties of the resource in question.

Filtering is enabled by the -f or --filter option of the form:

-f NAME OPERATOR VALUE

where NAME is the name of an element from the JSON resource properties.

For example, to list all jobs:

$ ucc list-jobs -f status equals RUNNING

To list all jobs submitted on Nov 13, 2007:

$ ucc list-jobs -f submissionTime contains 2007-11-13
Table 11 Filtering options

Operator (long and short form)

Description

equals, eq

String equality (ignoring case)

notequals, neq

String inequality (ignoring case)

contains, c

Substring match

notcontains, nc

substring non-match

greaterthan, gt

Lexical comparison

lessthan, lt

Lexical comparison

Low-level operations

UCC supports low-level access to REST API endpoints using the rest command, specifically you can execute HTTP GET, PUT, POST and DELETE requests with JSON content.

For example, to delete (destroy) a resource:

$ ucc rest delete <Address>

To get a complete property listing (i.e. print the JSON resource property document):

$ ucc rest get <Address>

To change properties, use the put command with JSON content:

$ ucc rest put '{"Tags": ["tests", "hpc" ]}'

These commands can be abbreviated, e.g. ucc rest d <Address>

groovy-img Scripting

UCC can execute Groovy scripts. Groovy is a dynamic scripting language similar to Python or Ruby, but very closely integrated with Java. The scripting facility can be used for automation tasks or implementation of custom commands, but it needs a bit of insight into how UCC and UNICORE work.

Script context

Your Groovy scripts can access some predefined variables that are summarized in the following table:

Table 12 Variables accessible for scripts

variable

description

Java type

registry

A preconfigured client for accessing the registry

eu.unicore.client.registry.IRegistryClient

configurationProvider

Security configuration provider (truststore, etc)

de.fzj.unicore.ucc.authn.UCCConfigurationProvider

auth

REST authentication mechanism

eu.unicore.services.rest.client.IAuthCallback

registryURL

the URL of the registry

java.lang.String

messageWriter

for writing messages to the user

de.fzj.unicore.ucc.MessageWriter

commandLine

the command line

org.apache.commons.cli.CommandLine

properties

defaults from the user’s properties file

java.util.Properties

Examples

Some example Groovy scripts can be found in the samples directory of the UCC distribution.

faq-img Frequently asked questions

Configuration

🤔 Do I really have to store my password in the preferences file? Isn’t this insecure?

Putting the password in a file or giving it as a commandline parameter can be considered insecure. The file could be read by others, and the commandline parameters may be visible in for example in the output of the ps command. Thus, UCC will simply ask for the password in case you did not specify it.

🤔 How can I enable more detailed logging?

UCC uses Log4j 2, by default the configuration is done in <UCC_HOME>/conf/logging.properties. You can edit this file and increase the logging levels, choose to log to a file or to the console, etc.

Usage

🤔 Can I use multiple registries with UCC?

Yes. Simply use a comma-separated list of URLs for the -c option. However, you may only use a single key/truststore, so all registries (and sites listed in them) must accept the same security credentials.

🤔 Can I upload and execute my own executable?

Yes. Check Running jobs.

🤔 Can I use UCC to list the contents of the registry?

Using the rest command (and optionally the UNIX jq utility for formatting the output), this is very easy. For example,

$ ucc rest get https://localhost:8080/DEMO-SITE/rest/core/registries/default_registry | jq

will list the content of the registry.